Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs71023428 | chr2:179037961 | G/GT | 5.93E-10 | 178 | 15.95 | 13.07 | 2.2 | KM Plot |
| PAAD | rs71023429 | chr2:179039591 | C/CAA | 1.24E-9 | 174 | 16.05 | 13.07 | 2.2 | KM Plot |
| PAAD | rs7109782 | chr11:125587193 | T/C | 0.000108 | 178 | 16.08 | 14.37 | 5.03 | KM Plot |
| PAAD | rs71167789 | chr4:2402164 | G/GC | 0 | 178 | 0.4 | 16.1 | 15.37 | KM Plot |
| PAAD | rs7120345 | chr11:125736526 | A/G | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs7123243 | chr11:125563559 | G/A | 7.15E-5 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs7123317 | chr11:125586469 | G/C | 0.000108 | 178 | 16.08 | 14.37 | 5.03 | KM Plot |
| PAAD | rs7124906 | chr11:125554299 | A/T | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs7138035 | chr12:104657527 | A/G | 6.65E-13 | 177 | 1.37 | 14.6 | 15.53 | KM Plot |
| PAAD | rs7139336 | chr12:104668200 | A/G | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs71423556 | chr2:179045234 | T/A | 5.93E-10 | 178 | 15.95 | 13.07 | 2.2 | KM Plot |
| PAAD | rs71536341 | chr6:44815869 | A/AT | 3.17E-6 | 176 | 11.77 | 16.2 | 16.22 | KM Plot |
| PAAD | rs71614994 | chr4:2400810 | A/G | 0 | 178 | 0.4 | 16.1 | 15.37 | KM Plot |
| PAAD | rs71762248 | chr1:162832744 | C/CTT | 1.14E-5 | 176 | 15.53 | 16.17 | 6.5 | KM Plot |
| PAAD | rs7185658 | chr16:81189336 | A/G | 8.39E-13 | 175 | 15.57 | 14.37 | 1.37 | KM Plot |